Htslib
Automatic Build
Inside ${HOME}/bioit/apps/htslib/SPEC
there is a script called build
. This just requires the version number and will download, compile, install and create the modulefile for you. Execute it as follows:
${HOME}/bioit/apps/htslib/SPEC/build 1.22
When that completes check that the new version is available using:
module avail htslib
If that shows as being there you can test it works with:
module load htslib/1.22
which tabix
tabix --version
If all is good, you can move to the RPM building step.
Manual Build
Download the version to be built into /opt/bioit/htslib/src
and untar
Inside the source run the following where 1.22 is the current one being built:
./configure --prefix=/opt/bioit/htslib/1.22
make
make install
Module setup
Add a module file in /opt/bioit/modulefiles/htslib/
for this version by copying previous ones and modifying the paths.
#%Module 1.0
#
# htslib module for use with 'environment-modules' package:
#
prepend-path PATH /opt/bioit/htslib/1.22/bin
prepend-path MANPATH /opt/bioit/htslib/1.22/share/man
RPM
There’s a SPEC file for this package in ${HOME}/bioit/apps/htslib/SPEC
so modify that with the new version details. Once changed, build it with the following command:
rpmbuild -bb htslib
This will create an installable RPM file which you can find in ${HOME}/rpmbuild/RPMS/x86_64
and just install that. It checks that the installation directory exists and will fail if it isn’t there.